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2019

Adhikari, T., Jimenez, J. C., Fernandez, G., & Louws, F. (2019). First Report of Anthracnose Causing both Crown and Fruit Rot of Strawberry by Colletotrichum siamense in North Carolina. Plant Disease, (ja).

Bourret, T. J., Boyle, W. K., Zalud, A. K., Valenzuela, J. G., Oliveira, F., & Lopez, J. E. (2019). The relapsing fever spirochete Borrelia turicatae persists in the highly oxidative environment of its soft‐bodied tick vector. Cellular microbiology, e12987.

Clark, N. M., Buckner, E., Fisher, A. P., Nelson, E. C., Nguyen, T. T., Simmons, A. R., … & Williams, C. M. (2019). Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks. bioRxiv, 517250.

Faber-Hammond, J. J., Coyle, K. P., Bacheller, S. K., Roberts, C. G., Mellies, J. L., Roberts, R. B., & Renn, S. C. (2019). The intestinal environment as an evolutionary adaptation to mouthbrooding in the Astatotilapia burtoni cichlid. FEMS microbiology ecology, 95(3), fiz016.

Gonzalez, L. M., Stewart, A. S., Freund, J., Kucera, C. R., Dekaney, C. M., Magness, S. T., & Blikslager, A. T. (2019). Preservation of Reserve Intestinal Epithelial Stem Cells following Severe Ischemic Injury. American Journal of Physiology-Gastrointestinal and Liver Physiology.

Hicks, J. A., & Liu, H. C. (2019). Impact of HVT Vaccination on Splenic miRNA Expression in Marek’s Disease Virus Infections. Genes10(2), 115.

Hung, C. S., Barlow, D. E., Varaljay, V. A., Drake, C. A., Crouch, A. L., Russell Jr, J. N., … & Biffinger, J. C. (2019). The biodegradation of polyester and polyester polyurethane coatings using Papiliotrema laurentii. International Biodeterioration & Biodegradation139, 34-43.

Ortiz Medina, J. F., Grunden, A., Hyman, M., & Call, D. (2019). Nitrogen Gas Fixation and Conversion to Ammonium using Microbial Electrolysis Cells. ACS Sustainable Chemistry & Engineering.

Noar, R. D., Thomas, E., & Daub, M. E. (2019). A novel polyketide synthase gene cluster in the plant pathogenic fungus Pseudocercospora fijiensis. PloS one14(2), e0212229.

Scarpassa, V. M., Debat, H. J., Alencar, R. B., Saraiva, J. F., Calvo, E., Arcà, B., & Ribeiro, J. M. (2019). An insight into the sialotranscriptome and virome of Amazonian anophelines. BMC genomics20(1), 166.

Tam, H. W., Hall, J. R., Messenger, Z. J., Jima, D. D., House, J. S., Linder, K., & Smart, R. C. (2019). C/EBPβ Suppresses Keratinocyte Autonomous Type 1 IFN Response and p53 to Increase Cell Survival and Susceptibility to UVB-induced Skin Cancer. Carcinogenesis.

2018

Arambula, S. E., Jima, D., & Patisaul, H. B. (2018). Prenatal bisphenol A (BPA) exposure alters the transcriptome of the neonate rat amygdala in a sex-specific manner: a CLARITY-BPA consortium study. Neurotoxicology65, 207-220.

Arniella M.B., Fitak R.R., Johnsen, S. (2018) Unmapped sequencing reads identify additional candidate genes linked to magnetoreception in rainbow trout. Environ Biol Fish 101: 711.

Blanco‐Meneses M., Carbone I., Ristaino JB. (2018) Population structure and migration of the Tobacco Blue Mold Pathogen, Peronospora tabacina, into North America and Europe. Mol Ecol. 27:737–751.

Bushakra, J. M., Dossett, M., Carter, K. A., Vining, K. J., Lee, J. C., Bryant, D. W., … & Bassil, N. V. (2018). Characterization of aphid resistance loci in black raspberry (Rubus occidentalis L.). Molecular breeding38(7), 83.

Cowley M., Skaar D. A., Jima D. D., Maguire R. L., Hudson K. M., Park S. S., . . . Hoyo, C. (2018). Effects of cadmium exposure on DNA methylation at imprinting control regions and genome-wide in mothers and newborn children. Environmental Health Perspectives (Online), 126 (3) doi:http://dx.doi.org/10.1289/EHP2085

Chu F.‐C., Klobasa W., Grubbs N., Lorenzen M.D. (2018) Development and use of a piggyBac‐based jumpstarter system in Drosophila suzukiiArch Insect Biochem Physiol. 97:e21439.

Davis, R. J., Belikoff, E. J., Scholl, E. H., Li, F., & Scott, M. J. (2018). no blokes is essential for male viability and X chromosome gene expression in the Australian sheep blowfly. Current Biology28(12), 1987-1992.

Douros, J. D., Baltzegar, D. A., Reading, B. J., Seale, A. P., Lerner, D. T., Grau, E. G., & Borski, R. J. (2018). Leptin stimulates cellular glycolysis through a STAT3 dependent mechanism in tilapia. Frontiers in endocrinology9.

Dums, J. T., Murphree, C. A., Vasani, N., Young, D., & Sederoff, H. (2018). Metabolic and Transcriptional Profiles of Dunaliella viridis Supplemented with Ammonium Derived from Glutamine. Frontiers in Marine Science5, 311.

Farrow III, J. M., Wells, G., & Pesci, E. C. (2018). Desiccation tolerance in Acinetobacter baumannii is mediated by the two-component response regulator BfmR. PloS one13(10), e0205638.

Fritz, M. L., DeYonke, A. M., Papanicolaou, A., Micinski, S., Westbrook, J., & Gould, F. (2018). Contemporary evolution of a Lepidopteran species, Heliothis virescens, in response to modern agricultural practices. Molecular ecology27(1), 167-181.

Gilbert M.K., Medina A., Mack B.M, Lebar M.D., Rodríguez A., Bhatnagar D., Magan N., Obrian G., Payne G. (2018) Carbon Dioxide Mediates the Response to Temperature and Water Activity Levels in Aspergillus flavus during Infection of Maize Kernels. Toxins 10(1): 5.

Gillung, J. P., Winterton, S. L., Bayless, K. M., Khouri, Z., Borowiec, M. L., Yeates, D., … & Mayer, C. (2018). Anchored phylogenomics unravels the evolution of spider flies (Diptera, Acroceridae) and reveals discordance between nucleotides and amino acids. Molecular phylogenetics and evolution128, 233-245.

Hicks, J. A., Trakooljul, N., & Liu, H. C. (2018). Alterations in cellular and viral microRNA and cellular gene expression in Marek’s disease virus-transformed T-cell lines treated with sodium butyrate. Poultry science.

Holloway, H.M.P., Yu, X., Dunne, J.C. et al. (2018) A SNP-based high-density linkage map of zoysiagrass (Zoysia japonica Steud.) and its use for the identification of QTL associated with winter hardiness.Mol Breeding 38: 10.

Hughes, R. A., Jin, X., Zhang, Y., Zhang, R., Tran, S., Williams, P. G., … & Miller, E. S. (2018). Genome sequence, metabolic properties and cyanobacterial attachment of Porphyrobacter sp. HT-58-2 isolated from a filamentous cyanobacterium–microbial consortium. Microbiology164(10), 1229-1239.

Hurley F.J., He X., Wang L., de los Reyes F.L. (2018) Kenaf addition has mixed effects on process performance of sequencing batch reactors treating municipal wastewater. Environ Sci: Water Res Technol 4: 711-720.

Lee, M., Puglisi, K. M., Cohort, U. S. B., Erill, I., & Caruso, S. M. (2018). Complete genome sequences of HonestAbe, Anthony, and Taffo16, three cluster C Bacillus cereus group bacteriophages. Genome Announc.6(25), e00493-18.

Messenger, Z. J., Hall, J. R., Jima, D. D., House, J. S., Tam, H. W., Tokarz, D. A., & Smart, R. C. (2018). C/EBPβ deletion in oncogenic Ras skin tumors is a synthetic lethal event. Cell death & disease9(11), 1054.

Munganyinka E., Ateka E.M., Kihurani A.W., Kanyange M.C., Tairo, F., Sseruwagi P., Ndunguru J. (2018) Cassava brown streak disease in Rwanda, the associated viruses and disease phenotypes. Plant Pathol 67(2): 377-387.

Perner J., Kropáčková S., Kopáček P., Ribeiro J.M.C. (2018) Sialome diversity of ticks revealed by RNAseq of single tick salivary glands. PLOS Neglected Tropical Diseases 12(4): e0006410.

Reynolds R.G., Puente-Rolón A.R., Burgess J.P., Baker B.O. (2018) Rediscovery and a Redescription of the Crooked-Acklins Boa, Chilabothrus schwartzi (Buden, 1975), Comb. Nov. Breviora 558 (1): 1-16

Reynolds R.G., Puente-Rolón A.R., Castle A.L., Van De Schoot M., and Geneva A.J. (2018) Herpetofauna of Cay Sal Bank, Bahamas and Phylogenetic Relationships of Anolis fairchildi, Anolis sagrei, and Tropidophis curtus from the Region. Breviora 560 (1): 1-19.

Ribeiro J.M.C., Martin-Martin I., Moreira F.R., Bernard K.A., Calvo E. (2018) A deep insight into the male and female sialotranscriptome of adult Culex tarsalis mosquitoes. Insect Biochem Mol Biol 95:1-9

Rock K.D., Horman B., Phillips A.L., McRitchie S.L., Watson S., Deese-Spruill J., Jima D., Sumner S., Stapleton H.M., Patisaul H.B. (2018) Molecular effects of developmental FM 550 exposure in Wistar rat placenta and fetal forebrain. Endocr Connect 7(2):305-324.

Ruark, C. L., Gardner, M., Mitchum, M. G., Davis, E. L., & Sit, T. L. (2018). Novel RNA viruses within plant parasitic cyst nematodes. PLoS One, 13 (3):e0193881

Sanglard, L. P., Nascimento, M., Moriel, P., Sommer, J., Ashwell, M., Poore, M. H., … & Serão, N. V. (2018). Impact of energy restriction during late gestation on the muscle and blood transcriptome of beef calves after preconditioning. BMC genomics19(1), 702.

Schweikert L.E., Fitak R.R., Johnsen S. (2018) De novo transcriptomics reveal distinct phototransduction signaling components in the retina and skin of a color-changing vertebrate, the hogfish (Lachnolaimus maximus). J Comp Physiol A 204 (5): 475–485.

Shi, R., Lewis, R. S., & Panthee, D. R. (2018). Filter paper-based spin column method for cost-efficient DNA or RNA purification. PloS one13(12), e0203011.

Slowan-Pomeroy, T. (2018). Phage Diversity of Six Mycobacteriophages and Host Range of 105 Mycobacteriophages in Four Mycobacteria Including Mycobacterium Tuberculosis H37Ra (Doctoral dissertation).

Thoemmes, M. S., Stewart, F. A., Hernandez-Aguilar, R. A., Bertone, M. A., Baltzegar, D. A., Borski, R. J., … & Dunn, R. R. (2018). Ecology of sleeping: the microbial and arthropod associates of chimpanzee beds. Royal Society open science5(5), 180382.

Twesigye, C. K., Ssekatawa, K., Kiggundu, A., Tushemereirwe, W., & Matovu, E. (2018). Variation among banana weevil Cosmopolites sordidus (Germar) populations in Uganda as revealed by AFLP markers and corm damage differences. Agriculture & Food Security7(1), 76.

Ubels J.L., DeJong R.J., Hoolsema B., Wurzberger A., Nguyen T.T., Blankespoor H.D., Blankespoor C.L. (2018) Impairment of retinal function in yellow perch (Perca flavescens) by Diplostomum baeri metacercariae. Int J Parasitology: Parasites and Wildlife 7(2): 171-179.

Wang J.P., Matthews M.L., Williams C.M., Shi R., … Sederoff R., Chiang V.L. (2018) Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis. Nat Commun Apr 20; 9(1):1579.

Withrow, J. M., & Tarpy, D. R. (2018). Cryptic “royal” subfamilies in honey bee (Apis mellifera) colonies. PloS one13(7), e0199124.

Wu, S., Lau, K. H., Cao, Q., Hamilton, J. P., Sun, H., Zhou, C., … & Crisovan, E. (2018). Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement. Nature communications9(1), 4580.

 

2017

Andres, R. J., Coneva, V., Frank, M. H., Tuttle, J. R., Samayoa, L. F., Han, S. W., … & Rojas-Pierce, M. (2017). Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proceedings of the National Academy of Sciences, 114(1), E57-E66.

Chu, F., Klobasa, W., Wu, P., Pinzi, S., Grubbs, N., Gorski, S., … & Lorenzen, M. D. (2017). Germline transformation of the western corn rootworm, Diabrotica virgifera virgifera. Insect Molecular Biology.

Fritz, M. L., Deyonke, A. M., Papanicolaou, A., Micinski, S., Westbrook, J., & Gould, F. (2017). Contemporary evolution of a Lepidopteran species, Heliothis virescens, in response to modern agricultural practices. bioRxiv, 103382.

Hengyou Z., Bao-Hua S. (2017) RNA-seq data comparisons of wild soybean genotypes in response to soybean cyst nematode (Heterodera glycines).Genomics Data 14: 36-39.

Hicks J.A., Porter T.E., Liu H.C. (2017) Identification of microRNAs controlling hepatic mRNA levels for metabolic genes during the metabolic transition from embryonic to posthatch development in the chicken. BMC Genomics 18: 687.

Hughes R., Zhang Y., Zhang R., Williams P.G., Lindsey J.S., Miller E.S. (2017) Genome Sequence and Composition of a Tolyporphin-Producing Cyanobacterium-MicrobialCommunity. Appl Environ Microbiol. 83(19) : e01068-17.

López-Uribe, M. M., Appler, R. H., Youngsteadt, E., Dunn, R. R., Frank, S. D., & Tarpy, D. R. (2017). Higher immunocompetence is associated with higher genetic diversity in feral honey bee colonies (Apis mellifera). Conservation Genetics, 1-8.

Mochizuki, H., Thomas, R., Moroff, S., & Breen, M. (2017). Genomic profiling of canine mast cell tumors identifies DNA copy number aberrations associated with KIT mutations and high histological grade. Chromosome Research, 1-15.

Parsons, C., Lee, S., Jayeola, V., & Kathariou, S. (2017). Novel Cadmium Resistance Determinant in Listeria monocytogenes. Applied and environmental microbiology83(5), e02580-16.

Pettersson, M., Frampton, J., Rönnberg, J., Shew, H. D., Benson, D. M., Kohlway, W. H., … & Cubeta, M. A. (2017). Increased diversity of Phytophthora species in Fraser fir Christmas tree plantations in the Southern Appalachians. Scandinavian Journal of Forest Research32(5), 412-420.

Rivera-Serrano, E. E., Fritch, E. J., Scholl, E. H., & Sherry, B. (2017). A cytoplasmic RNA virus alters the function of the cell splicing protein SRSF2. Journal of Virology, JVI-02488.

Saville A., Charles M., Chavan S., Muñoz M., Gómez-Alpizar L., Ristaino J.B. (2017) Population Structure of Pseudocercospora fijiensis in Costa Rica Reveals Shared Haplotype Diversity with Southeast Asian Populations. Phytopathology 107(12): 1541-1548.

Scruggs, A. C., Basaiah, T., Adams, M., & Quesada-Ocampo, L. M. (2017). Genetic diversity, fungicide sensitivity, and host resistance to Ceratocystis fimbriata infecting sweetpotato in North Carolina. Plant Disease, (ja).

Shi, R., Wang, J. P., Lin, Y. C., Li, Q., Sun, Y. H., Chen, H., … & Chiang, V. L. (2017). Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa. Planta, 1-12.

Shu X., Livingston D.P., Woloshuk C.P., Payne G.A. (2017) Comparative Histological and Transcriptional Analysis of Maize Kernels Infected with Aspergillus flavus and Fusarium verticillioides. Frontiers in Plant Science 8:2075

Skelly, D. A., McCusker, J. H., Stone, E. A., & Magwene, P. M. (2017). Private haplotype barcoding facilitates inexpensive high-resolution genotyping of multiparent crosses. bioRxiv, 116582.

Sun, Y. H., Hung, C. Y., Qiu, J., Chen, J., Kittur, F. S., Oldham, C. E., … & Xie, J. (2017). Accumulation of high OPDA level correlates with reduced ROS and elevated GSH benefiting white cell survival in variegated leaves. Scientific Reports7, 44158.

Tairo F., Mbewe W. K., Mark D., Lupembe M., Sseruwagi P., Ndunguru, J. (2017). Phylogenetic characterization of East African cassava mosaic begomovirus (Geminiviridae) isolated from Manihot carthaginensis subsp. glaziovii (Müll.Arg.) Allem., from a non-cassava growing region in Tanzania. African J Biotechnol 16(36), 1826-1831.

Thomas, A., Carbone, I., Choe, K., Quesada‐Ocampo, L. M., & Ojiambo, P. S. (2017). Resurgence of cucurbit downy mildew in the United States: Insights from comparative genomic analysis of Pseudoperonospora cubensis. Ecology and Evolution.

Vining, K. J., Salinas, N., Tennessen, J. A., Zurn, J. D., Sargent, D. J., Hancock, J., & Bassil, N. V. (2017). Genotyping-by-sequencing enables linkage mapping in three octoploid cultivated strawberry families. PeerJ Preprints5, e2975v1.

Waldeck, N., Burkey, K., Carter, T., Dickey, D., Song, Q., & Taliercio, E. (2017). RNA-Seq study reveals genetic responses of diverse wild soybean accessions to increased ozone levels. BMC genomics18(1), 498.

Zhang, X., Yang, Q., Rucker, E., Thomason, W., & Balint-Kurti, P. (2017). Fine mapping of a quantitative resistance gene for gray leaf spot of maize (Zea mays L.) derived from teosinte (Z. mays ssp. parviglumis). Theoretical and Applied Genetics, 1-11.

2016

Arambula, S. E., Belcher, S. M., Planchart, A., Turner, S. D., & Patisaul, H. B. (2016). Impact of Low Dose Oral Exposure to Bisphenol A (BPA) on the Neonatal Rat Hypothalamic and Hippocampal Transcriptome: A CLARITY-BPA Consortium Study. Endocrinology, 157(10), 3856-3872.

Burford Reiskind, M. O., Coyle, K., Daniels, H. V., Labadie, P., Reiskind, M. H., Roberts, N. B., … & Vargo, E. L. (2016). Development of a universal double‐digest RAD sequencing approach for a group of nonmodel, ecologically and economically important insect and fish taxa. Molecular Ecology Resources.

Christiaens, O., Prentice, K., Pertry, I., Ghislain, M., Bailey, A., Niblett, C., … & Smagghe, G. (2016). RNA interference: a promising biopesticide strategy against the African Sweetpotato Weevil Cylas brunneus. Scientific Reports, 6.

Friedenberg, S. G., & Meurs, K. M. (2016). Genotype imputation in the domestic dog. Mammalian Genome, 1-10.

Friedenberg, S. G., Chdid, L., Keene, B., Sherry, B., Motsinger-Reif, A., & Meurs, K. M. (2016). Use of RNA-seq to identify cardiac genes and gene pathways differentially expressed between dogs with and without dilated cardiomyopathy. American Journal of Veterinary Research77(7), 693-699.

Fritz, M. L., Paa, S., Baltzegar, J., & Gould, F. (2016). Application of a dense genetic map for assessment of genomic responses to selection and inbreeding in Heliothis virescens. Insect molecular biology.

Hamilton, T. L., Bovee, R. J., Sattin, S. R., Mohr, W., Gilhooly III, W. P., Lyons, T. W., … & Macalady, J. L. (2016). Carbon and sulfur cycling below the chemocline in a meromictic lake and the identification of a novel taxonomic lineage in the FCB superphylum, Candidatus Aegiribacteria. Frontiers in microbiology7.

Harrell, E. A., & Miller, E. S. (2016). Genome sequence of Aeromicrobium erythreum NRRL B-3381, an erythromycin-producing bacterium of the Nocardioidaceae. Genome announcements4(2), e00300-16.

Horn, B. W., Gell, R. M., Singh, R., Sorensen, R. B., & Carbone, I. (2016). Sexual reproduction in Aspergillus flavus sclerotia: Acquisition of novel alleles from soil populations and uniparental mitochondrial inheritance. PloS one, 11(1).

Hung, C. Y., Qiu, J., Sun, Y. H., Chen, J., Kittur, F. S., Henny, R. J., … & Xie, J. (2016). Gibberellin deficiency is responsible for shy-flowering nature of Epipremnum aureum. Scientific Reports6.

Morita, S. I., Bayless, K. M., Yeates, D. K., & Wiegmann, B. M. (2016). Molecular phylogeny of the horse flies: a framework for renewing tabanid taxonomy. Systematic Entomology, 41(1), 56-72.

Musungu, B. M., Bhatnagar, D., Brown, R. L., Payne, G. A., OBrian, G., Fakhoury, A. M., & Geisler, M. (2016). A Network Approach of Gene Co-expression in the Zea mays/Aspergillus flavus Pathosystem to Map Host/Pathogen Interaction Pathways. Frontiers in Genetics, 7.

Noar, R. D., & Daub, M. E. (2016). Bioinformatics Prediction of Polyketide Synthase Gene Clusters from Mycosphaerella fijiensis. PloS one11(7), e0158471.

Noar, R. D., & Daub, M. E. (2016). Transcriptome sequencing of Mycosphaerella fijiensis during association with Musa acuminata reveals candidate pathogenicity genes. BMC genomics, 17(1), 690.

Parsons, Cameron, Sangmi Lee, Victor Jayeola, and Sophia Kathariou. “Characterization of a novel cadmium resistance determinant in Listeria monocytogenes.” Applied and Environmental Microbiology (2016): AEM-02580.

Perner, J., Provazník, J., Schrenková, J., Urbanová, V., Ribeiro, J. M., & Kopáček, P. (2016). RNA-seq analyses of the midgut from blood-and serum-fed Ixodes ricinus ticks. Scientific Reports, 6.

Pettersson, M., Frampton, J., Rönnberg, J., Shew, H. D., Benson, D. M., Kohlway, W. H., … & Cubeta, M. A. (2016). Increased diversity of Phytophthora Species in Fraser fir Christmas Tree Plantations in the Southern Appalachians. Scandinavian Journal of Forest Research, (just-accepted), 1-32.

Reveille, A. M., Eldridge, K. A., & Temple, L. M. (2016). Complete genome sequence of Bacillus megaterium bacteriophage Eldridge. Genome announcements4(2), e01728-15.

Roberts, N. B., Juntti, S. A., Coyle, K. P., Dumont, B. L., Stanley, M. K., Ryan, A. Q., … & Roberts, R. B. (2016). Polygenic sex determination in the cichlid fish Astatotilapia burtoni. BMC genomics, 17(1), 835.

Saville, A. C., Martin, M. D., & Ristaino, J. B. (2016). Historic Late Blight Outbreaks Caused by a Widespread Dominant Lineage of Phytophthora infestans (Mont.) de Bary. PloS one, 11(12), e0168381.

Schwartz, S., Truglio, M., Scott, M. J., & Fitzsimons, H. L. (2016). Long-term Memory in Drosophila Is Influenced by the Histone Deacetylase HDAC4 Interacting with the SUMO-Conjugating Enzyme Ubc9. Genetics, genetics-115.

Scruggs, Andrew C., and Lina Maria Quesada-Ocampo. (2016). Etiology and epidemiological conditions promoting Fusarium Root Rot in sweetpotato.” Phytopathology 2016 Apr 6. [Epub ahead of print].

Spears, P. A., Havell, E. A., Hamrick, T. S., Goforth, J. B., Levine, A. L., Abraham, S. T., … & Orndorff, P. E. (2016). Listeria monocytogenes wall teichoic acid decoration in virulence and cell‐to‐cell spread. Molecular microbiology Feb 12. doi: 10.1111/mmi.13353. [Epub ahead of print]

Villarino, G. H., Hu, Q., Manrique, S., Flores-Vergara, M., Sehra, B., Robles, L., … & Heber, S. (2016). Transcriptomic Signature of the SHATTERPROOF2 Expression Domain Reveals the Meristematic Nature of Arabidopsis Gynoecial Medial Domain. Plant physiology171(1), 42-61.

Wang, G. F., & Balint-Kurti, P. J. (2016). Maize homologs of CCoAOMT and HCT, two key enzymes in lignin biosynthesis, form complexes with the NLR Rp1 protein to modulate the defense response. Plant physiology, 171(3), 2166-2177.

Watts, M., Winkler, I. S., Daugeron, C., de Carvalho, C. J., Turner, S. P., & Wiegmann, B. M. (2016). Where do the neotropical Empidini lineages (Diptera: Empididae: Empidinae) fit in a worldwide context? Molecular phylogenetics and evolution, 95, 67-78.

Yoder, A. D., Campbell, C. R., Blanco, M. B., dos Reis, M., Ganzhorn, J. U., Goodman, S. M., … & Ralison, J. M. (2016). Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar’s forests past. Proceedings of the National Academy of Sciences, 201601081.

Zambrana-Echevarría, C., De Jesús-Kim, L., Márquez-Karry, R., Siritunga, D., & Jenkins, D. (2016). Diversity of Papaya ringspot virus Isolates in Puerto Rico. HortScience51(4), 362-369.

2015

Burke, M., Scholl, E. H., Bird, D. M., Schaff, J. E., Coleman, S., Crowell, R., … & Windham, E. (2015). The plant parasite Pratylenchus coffeae carries a minimal nematode genome. Nematology, 17(6), 621-637.

Carson, S., Bruff, E., DeFoor, W., Dums, J., Groth, A., Hatfield, T., … & Miller, E. S. (2015). Genome sequences of six Paenibacillus larvae Siphoviridae phages. Genome Announcements, 3(3), e00101-15.

Gupta, V., Estrada, A. D., Blakley, I., Reid, R., Patel, K., Meyer, M. D., … & Loraine, A. E. (2015). RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing. GigaScience, 4:5, 1-22.

Haseyama, K. L., Wiegmann, B. M., Almeida, E. A., & de Carvalho, C. J. (2015). Say goodbye to tribes in the new house fly classification: A new molecular phylogenetic analysis and an updated biogeographical narrative for the Muscidae (Diptera). Molecular phylogenetics and evolution, 89, 1-12.

Lewis, D. L., Notey, J. S., Chandrayan, S. K., Loder, A. J., Lipscomb, G. L., Adams, M. W., & Kelly, R. M. (2015). A mutant (‘lab strain’) of the hyperthermophilic archaeon Pyrococcus furiosus, lacking flagella, has unusual growth physiology. Extremophiles, 19(2), 269-281.

Ma, D. M., Wang, Z., Wang, L., Alejos-Gonzales, F., Sun, M. A., & Xie, D. Y. (2015). A Genome-Wide Scenario of Terpene Pathways in Self-pollinated Artemisia annua. Molecular plant, 8(11), 1580-1598.

Mochizuki, H., Kennedy, K., Shapiro, S. G., & Breen, M. (2015). BRAF mutations in canine cancers. PloS One, 10(6), e0129534.

Perera, O. P., Shelby, K. S., Popham, H. J., Gould, F., Adang, M. J., & Jurat-Fuentes, J. L. (2015). Generation of a transcriptome in a model lepidopteran pest, Heliothis virescens, using multiple sequencing strategies for profiling midgut gene expression. PloS one, 10(6), e0128563.

Prentice, K., Pertry, I., Christiaens, O., Bauters, L., Bailey, A., Niblett, C., … & Smagghe, G. (2015). Transcriptome analysis and systemic RNAi response in the African Sweetpotato Weevil (Cylas puncticollis, Coleoptera, Brentidae). PloS One, 10(1), e0115336.

Sullivan, C.V., Chapman, R.W., Reading, B.J., and Anderson, P.E.(2015). Transcriptomics of egg quality in teleost fish: New developments and future directions. General and Comparative Endocrinology 221, 23-30.

Tuttle, J. R., Nah, G., Duke, M. V., Alexander, D. C., Guan, X., Song, Q., … & Haigler, C. H. (2015). Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall synthesis, represses lignification, and prolongs elongation. BMC genomics, 16(1), 1.

Villarino, G. H., Flores-Vergara, M., Hu, Q., Sehra, B., Robles, L., Brumos, J., … & Heber, S. (2015). Temporal and spatial domain-specific transcriptomic analysis of a vital reproductive meristem in Arabidopsis thaliana. bioRxiv, 032128.

Wang, G. F., He, Y., Strauch, R., Olukolu, B. A., Nielsen, D., Li, X., & Balint-Kurti, P. J. (2015). Maize homologs of Hydroxycinnamoyltransferase, a key enzyme in Lignin Biosynthesis, bind the Nucleotide Binding Leucine-Rich Repeat Rp1 proteins to modulate the defense response. Plant physiology, 169(3), 2230-2243.

Wang, G. F., Ji, J., Ei-Kasmi, F., Dangl, J. L., Johal, G., & Balint-Kurti, P. J. (2015). Molecular and Functional Analyses of a Maize Autoactive NB-LRR Protein Identify Precise Structural Requirements for Activity. PLoS pathogens, 11(2), e1004674-e1004674.

Wang, G. F., & Balint-Kurti, P. (2015). Cytoplasmic and nuclear localizations are important for the hypersensitive response conferred by maize autoactive Rp1-D21 protein. Molecular Plant-Microbe Interactions

Wong, R. Y., Lamm, M. S., & Godwin, J. (2015). Characterizing the neurotranscriptomic states in alternative stress coping styles. BMC genomics, 16(1), 425.

Wong, R. Y., & Godwin, J. (2015). Neurotranscriptome profiles of multiple zebrafish strains. Genomics data, 5, 206-209.

Ye, W., Zeng, Y., & Kerns, J. (2015). Molecular characterization and diagnosis of Root-Knot Nematodes (Meloidogyne spp.) from Turfgrasses in North Carolina, USA. PloS one, 10(11), e0143556.

Zeng, Y., Ye, W., Kerns, J., Tredway, L., Martin, S., & Martin, M. (2015). Molecular characterization and phylogenetic relationships of plant-parasitic nematodes associated with Turfgrasses in North Carolina and South Carolina, United States. Plant Disease, PDIS-10.


2014

Baugher, J. L., Durmaz, E., & Klaenhammer, T. R. (2014). Spontaneously induced prophages in Lactobacillus gasseri contribute to horizontal gene transfer. Applied and Environmental Microbiology, 80(11), 3508-3517.

Egekwu, N., Sonenshine, D. E., Bissinger, B. W., & Roe, R. M. (2014). Transcriptome of the female synganglion of the black-legged tick Ixodes scapularis (Acari: Ixodidae) with comparison between Illumina and 454 systems. PLoS One, 9(7), e102667.

Jacob, M. E., Bai, J., Renter, D. G., Rogers, A. T., Shi, X., & Nagaraja, T. G. (2014). Comparing real-time and conventional PCR to culture-based methods for detecting and quantifying Escherichia coli O157 in cattle feces. Journal of Food Protection, 77(2), 314-319.

Marks, T. J., & Hamilton, P. T. (2014). Characterization of a thermophilic bacteriophage of Geobacillus kaustophilus. Archives of Virology, 159(10), 2771-2775.

Mulkey, S. E., Zuleta, M., Keebler, J. E., Schaff, J. E., & Milla-Lewis, S. R. (2014). Development and characterization of simple sequence repeat markers for St. Augustine grass. Crop Science, 54(1), 401-412.

Reading, B. J., Hiramatsu, N., Schilling, J., Molloy, K. T., Glassbrook, N., Mizuta, H., … & Sullivan, C. V. (2014). Lrp13 is a novel vertebrate lipoprotein receptor that binds vitellogenins in teleost fishes. Journal of Lipid Research, 55(11), 2287-2295.

Schilling, J., Nepomuceno, A., Schaff, J. E., Muddiman, D. C., Daniels, H. V., & Reading, B. J. (2014). Compartment proteomics analysis of white perch (Morone americana) ovary using support vector machines. Journal of Proteome Research, 13(3), 1515-1526.


2013

Boncristiani, H. F., Evans, J. D., Chen, Y., Pettis, J., Murphy, C., Lopez, D. L., … & Rueppell, O. (2013). In vitro infection of pupae with Israeli acute paralysis virus suggests disturbance of transcriptional homeostasis in honey bees (Apis mellifera). PLoS One, 8(9), e73429.

Bruno-Barcena, J. M., Chinn, M. S., & Grunden, A. M. (2013). Genome sequence of the autotrophic acetogen Clostridium autoethanogenum JA1-1 strain DSM 10061, a producer of ethanol from carbon monoxide. Genome Announcements, 1(4), e00628-13.

Chow C.Y., Wolfner M.F., Clark A.G. (2013) Large neurological component to genetic differences underlying biased sperm use in Drosophila. Genetics 193(1):177-85.

Goher, M., Hicks, J. A., & Liu, H. C. (2013). The interplay between MDV and HVT affects viral miRNa expression. Avian Diseases, 57(2s1), 372-379.

Hicks, J. A., Yoo, D., & Liu, H. C. (2013). Characterization of the microRNAome in porcine reproductive and respiratory syndrome virus infected macrophages. PloS One, 8(12), e82054.

Singh, N. D., Jensen, J. D., Clark, A. G., & Aquadro, C. F. (2013). Inferences of demography and selection in an African population of Drosophila melanogaster. Genetics, 193(1), 215-228.

Wong, R. Y., Oxendine, S. E., & Godwin, J. (2013). Behavioral and neurogenomic transcriptome changes in wild-derived zebrafish with fluoxetine treatment. BMC Genomics, 14(1), 348.

Zhang, J., Franks, R. G., Liu, X., Kang, M., Keebler, J. E., Schaff, J. E., … & Xiang, Q. Y. J. (2013). De novo sequencing, characterization, and comparison of inflorescence transcriptomes of Cornus canadensis and C. florida (Cornaceae). PLoS One, 8(12), e82674.


2012

Jeffers, L. A., Shen, H., Khalil, S., Bissinger, B. W., Brandt, A., Gunnoe, T. B., & Roe, R. M. (2012). Enhanced activity of an insecticidal protein, trypsin modulating oostatic factor (TMOF), through conjugation with aliphatic polyethylene glycol. Pest Management Science, 68(1), 49-59.

Morckel, A. R., Lusic, H., Farzana, L., Yoder, J. A., Deiters, A., & Nascone-Yoder, N. M. (2012). A photoactivatable small-molecule inhibitor for light-controlled spatiotemporal regulation of Rho kinase in live embryos. Development, 139(2), 437-442.

Reading, B. J., Chapman, R. W., Schaff, J. E., Scholl, E. H., Opperman, C. H., & Sullivan, C. V. (2012). An ovary transcriptome for all maturational stages of the striped bass (Morone saxatilis), a highly advanced perciform fish. BMC Research Notes, 5(1), 111.

Rodrigues da Cunha, L., Ferreira, C. L. F., Durmaz, E., Goh, Y. J., Sanozky-Dawes, R., & Klaenhammer, T. (2012). Characterization of Lactobacillus gasseri isolates from a breast-fed infant. Gut microbes, 3(1), 15-24.

Staley, B.F., de los Reyes, F.L., & Barlaz, M.A. (2012) Comparison of Bacteria and Archaea communities in municipal solid waste, individual refuse components, and leachate. FEMS Microbiology and Ecology, 79(2), 465-73.

Tarpy, D. R., Keller, J. J., Caren, J. R., & Delaney, D. A. (2012). Assessing the mating ‘health’ of commercial honey bee queens. Journal of Economic Entomology, 105(1), 20-25.

Thelwall, P. E., Simpson, N. E., Rabbani, Z. N., Clark, M. D., Pourdeyhimi, R., Macdonald, J. M., … & Gamcsik, M. P. (2012). In vivo MR studies of glycine and glutathione metabolism in a rat mammary tumor. NMR in Biomedicine, 25(2), 271-278.

Thomas, V. P., Fudali, S. L., Schaff, J. E., Liu, Q., Scholl, E. H., Opperman, C. H., … & Williamson, V. M. (2012). A sequence-anchored linkage map of the plant–parasitic nematode Meloidogyne hapla reveals exceptionally high genome-wide recombination. Genetics, 2(7), 815-824.


2011

De Vries, B. D., Fehr, W. R., Welke, G. A., & Dewey, R. E. (2011). Molecular characterization of the mutant (A22) allele for reduced palmitate concentration in soybean. Crop Science, 51(4), 1611-1616.

Gamcsik, M. P., Clark, M. D., Ludeman, S. M., Springer, J. B., D’Alessandro, M. A., Simpson, N. E., … & Thelwall, P. E. (2011). Non-invasive monitoring of L-2-oxothiazolidine-4-carboxylate metabolism in the rat brain by in vivo 13C magnetic resonance spectroscopy. Neurochemical Research, 36(3), 443-451.

Staley, B. F., Francis, L., & Barlaz, M. A. (2011). Effect of spatial differences in microbial activity, pH, and substrate levels on methanogenesis initiation in refuse. Applied and Environmental Microbiology, 77(7), 2381-2391.

Torres-Barragan, A., Suazo, A., Buhler, W. G., & Cardoza, Y. J. (2011). Studies on the entomopathogenicity and bacterial associates of the nematode Oscheius carolinensis. Biological Control, 59(2), 123-129.

Trautwein, M. D., Wiegmann, B. M., & Yeates, D. K. (2011). Overcoming the effects of rogue taxa: Evolutionary relationships of the bee flies. PLoS Currents, 3, RRN1233.

Wiegmann, B. M., Trautwein, M. D., Winkler, I. S., Barr, N. B., Kim, J. W., Lambkin, C., … & Yeates, D. K. (2011). Episodic radiations in the fly tree of life. Proceedings of the National Academy of Sciences, 108(14), 5690-5695.


2010

Blumer-Schuette, S. E., Lewis, D. L., & Kelly, R. M. (2010). Phylogenetic, microbiological, and glycoside hydrolase diversities within the extremely thermophilic, plant biomass-degrading genus Caldicellulosiruptor. Applied and Environmental Microbiology, 76(24), 8084-8092.

Georgianna, D., Fedorova, N. D., Burroughs, J. L., Dolezal, A. L., Bok, J. W., Horowitz-Brown, S. I. G. A. L., … & Payne, G. A. (2010). Beyond aflatoxin: four distinct expression patterns and functional roles associated with Aspergillus flavus secondary metabolism gene clusters. Molecular Plant Pathology, 11(2), 213-226.

Joo, H., Choi, K., & Hodgson, E. (2010). Human metabolism of atrazine. Pesticide Biochemistry and Physiology, 98(1), 73-79.

le Roux, L. D., Johnson, M. E., Jason So, M., & de los Reyes, F. L. (2010) Use of molecular tools to identify microbial communities in a full scale biotrickling filter treating odors from a municipal WWTP. Proceedings of the Water Environment Federation, Odors and Air Pollutants 2010, 855-863.

Petersen, M. J., Bertone, M. A., Wiegmann, B. M., & Courtney, G. W. (2010). Phylogenetic synthesis of morphological and molecular data reveals new insights into the higher‐level classification of Tipuloidea (Diptera). Systematic Entomology, 35(3), 526-545.

Ponnusamy, L., Wesson, D. M., Arellano, C., Schal, C., & Apperson, C. S. (2010). Species composition of bacterial communities influences attraction of mosquitoes to experimental plant infusions. Microbial Ecology, 59(1), 158-173.

Smith, M. P., Ponnusamy, L., Jiang, J., Ayyash, L. A., Richards, A. L., & Apperson, C. S. (2010). Bacterial pathogens in ixodid ticks from a Piedmont County in North Carolina: prevalence of rickettsial organisms. Vector-Borne and Zoonotic Diseases, 10(10), 939-952.

Tarpy, D. R., Caren, J. R., Delaney, D. A., Sammataro, D., Finley, J., Loper, G. M., & DeGrandi-Hoffman, G. (2010). Mating frequencies of Africanized honey bees in the south western USA. Journal of Apicultural Research, 49(4), 302-310.


2009

Opperman, C. H., Bird, D. M., & Schaff, J. E. (2009). Genomic analysis of the root-knot nematode genome. In Cell Biology of Plant Nematode Parasitism (pp. 221-237). Springer Berlin Heidelberg.

Horn, B. W., Ramirez-Prado, J. H., & Carbone, I. (2009). Sexual reproduction and recombination in the aflatoxin-producing fungus Aspergillus parasiticus. Fungal Genetics and Biology, 46(2), 169-175.

Truong, V. D., Deighton, N., Thompson, R. T., McFeeters, R. F., Dean, L. O., Pecota, K. V., & Yencho, G. C. (2009). Characterization of anthocyanins and anthocyanidins in purple-fleshed sweetpotatoes by HPLC-DAD/ESI-MS/MS. Journal of Agricultural and Food Chemistry, 58(1), 404-410.

Wiegmann, B. M., Trautwein, M. D., Kim, J. W., Cassel, B. K., Bertone, M. A., Winterton, S. L., & Yeates, D. K. (2009). Single-copy nuclear genes resolve the phylogeny of the holometabolous insects. BMC Biology, 7(1), 34.

Zhou, S., Stone, E. A., Mackay, T. F., & Anholt, R. R. (2009). Plasticity of the chemoreceptor repertoire in Drosophila melanogaster. PLoS Genet, 5(10), e1000681.


2008

Opperman, C. H., Bird, D. M., Williamson, V. M., Rokhsar, D. S., Burke, M., Cohn, J., … & Windham, E. (2008). Sequence and genetic map of Meloidogyne hapla: a compact nematode genome for plant parasitism. Proceedings of the National Academy of Sciences, 105(39), 14802-14807.